Dr. Michael Schmid

List of publications
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Selected Publications

PUBLICATIONS IN SCIENTIFIC JOURNALS AND CHAPTERS IN BOOK

    2012

  1. Trejo, A., de-Bashan, L. E., Hartmann, A., Hernandez, J.P., Rothballer, M., Schmid, M. and Bashan, Y. 2012. Recycling waste debris of immobilized microalgae and plant growth-promoting bacteria from wastewater treatment as a resource to improve fertility of eroded desert soil. Environmental and Experimental Botany 75 : 65-73

    2011

  2. de-Bashan, L.E., Schmid, M., Rothballer, M., Hartmann, A., and Bashan Y., 2011. Cell-cell interaction in the eukaryote-prokaryote model using the microalgae Chlorella vulgaris and the bacterium Azospirillum brasilense immobilized in polymer beads. Journal of Phycology 47:1350-1359

  3. Fischer, D., Pfitzner, B., Schmid, M., Simoes-Araujo, J. L., Reis, V. M., Pereira, W., Ormeno-Orrillo, E., Hai, B., Hofmann, A., Schloter, M., Martinez-Romero, E., Baldani, J. I., and Hartmann, A. 2011 Molecular characterisation of the diazotrophic bacterial community in uninoculated and inoculated field-grown sugarcane (Saccharum sp.). Plant and Soil DOI: 10.1007/s11104-011-0812-0

  4. Gontia, I., Kavita, K., Schmid, M., Hartmann, A. and Jha, B. (2011) Brachybacterium saurashtrense sp. nov., a halotolerant root-associated bacterium with plant growth promoting potential. Internatonal Journal of Systematic and Evolutionary Microbiology DOI:10.1099/ijs.0.023176-0

  5. Li, D., Rothballer, M., Schmid, M., Esperschutz, J. and Hartmann, A. (2011) Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. Internatonal Journal of Systematic and Evolutionary Microbiology 61: 2589-2594

  6. Kaestli,M., Schmid, M., Mayo, M., Rothballer, M., Harrington, G., Richardson, L., Hill, A., Hill, J., Tuanyok, A., Keim, P., Hartmann, A. and Currie, B. J. (2011) Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environmental Microbiology DOI:10.1111/j.1462-2920.2011.02671.x

    2010

  7. Engel, A. S., Meisinger, D. B., Porter, M. L., Payn, R. A., Schmid, M., Stern, L. A., Schleifer, KH. and Lee, N. M. (2010) Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). The ISME Journal 4: 98–110

  8. Wang, F., Dorfler, U., Schmid, M., Fischer, D., Kinzel, L., Scherb, H., Munch, J.C, Jiang, X. and Schroll, R. (2010) Homogeneous inoculation vs. microbial hot spots of isolated strain and microbial community: What is the most promising approach in remediating 1,2,4-TCB contaminated soils?. Soil Biology and Biochemistry 42: 331-336

  9. Muller, A. A., Schmid, M., Meyer, O. and Meussdoerffer, F. G. (2010) Listeria seeligeri isolates from food processing environments form two phylogenetic lineages. Applied and Environmental Microbiology 76: 3044–3047

  10. Nabti E., Sahnoune M., Ghoul M., Fischer D., Hofmann A., Rothballer M., Schmid M., and Hartmann A. (2010). Restoration of growth of durum wheat (Triticum durum var. waha) under saline conditions due to inoculation with the rhizosphere bacterium Azospirillum brasilense NH and extracts of the marine alga Ulva lactuca. Journal of Plant Growth Regulation 29: 6-22

    2009

  11. Getenga, Z., Dorfler, U., Iwobi, A., Schmid, M. and Schroll, R. (2009) Atrazine and terbuthylazine mineralization by an Arthrobacter sp. isolated from an sugarcane-cultivated soil in Kenya. Chemosphere 77: 534–539

  12. Schmid, M., Iversen, C., Gontia, I., Stephan, R., Hofmann, A., Hartmann, A., Jha, B., Eberl, L., Riedel, K. and Lehner, A. (2009) Evidence for a plant-associated natural habitat for Cronobacter spp. Research in Microbiology 160: 608 - 614

  13. Paul Chowdhury S., Schmid M., Hartmann A., and Tripathi A. K. (2009). Diversity of 16S-rRNA and nifH genes derived from rhizosphere soil and roots of an endemic drought tolerant grass, Lasiurus sindicus. European Journal of Soil Biology 45: 114-122

  14. Jha B., Thakur M. C., Gontia I., Albrecht V., Stoffels M., Schmid M., and Hartmann A. (2009). Isolation, partial identification and application of diazotrophic rhizobacteria from traditional Indian rice cultivars. European Journal of Soil Biology 45: 62-72

  15. Oliveira A.L.M, Stoffels M., Schmid M., Reis V.M., Baldani J.I., and Hartmann A. (2009). Colonization of sugarcane plantlets by mixed inoculations with diazotrophic bacteria. European Journal of Soil Biology 45: 106-113

  16. Hartmann A., Schmid M., van Tuinen D., and Berg G. (2009). Plant-driven selection of microbes. Plant Soil in press, doi: 10.1007/s11104-008-9814-y

    2008

  17. Rothballer M., Eckert B., Schmid M., Fekete A., Schloter M., and Hartmann A. (2008). Endophytic root colonization of gramineous plants by Herbaspirillum frisingense. FEMS Microbiology Ecology 66: 85-95

  18. Sharma M., Schmid M., Rothballer M., Hause G., Zuccaro A., Imani J., Kampfer P., Schäfer P., Hartmann A., and Kogel K.-H. (2008). Detection and identification of bacteria intimately associated with representatives of the order Sebacinales. Cellular Microbiology 10: 2235–2246

  19. Hartmann, A., Rothballer, M. and Schmid, M. (2008). Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research. Plant and Soil 312: 7-14

    2007

  20. Wang, F., Grundmann, S., Schmid, M., Dorfler, U., Rohrer, S., Munch, J. C., Hartmann, A., Xin, J. and Schroll, R. (2007). Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil. Chemosphere 67: 896-902

  21. Selesi, D., Pattis, I., Schmid, M., Kandeler. E. and Hartmann, A. (2007). Quantification of bacterial RubisCO genes in soils by cbbL targeted real-time PCR. Journal of Microbiological Methods 69: 497-503

  22. Chowdhury, S. P., Schmid, M., Hartmann, A. and Tripathi, A.K. (2007). Identification of diazotrophs in the culturable bacterial community associated with roots of Lasiurus sindicus, a perennial grass of Thar Desert, India. Microbial Ecology 54: 82-90

  23. Nabti, E., Sahnoune, M., Adjrad, S., van Dommelen, A., Ghoul, M., Schmid, M. and Hartmann, A. (2007). A halophilic and osmotolerant Azospirillum brasilense strain from Algerian Soil restores wheat growth under saline conditions. Engineering in Life Sciences 7: 354-360

  24. Bertaux, J., Gloger, U., Schmid, M., Hartmann, A. and Scheu, S. (2007). Routine fluorescence in situ hybridization in soil. Journal of Microbiological Methods 69: 451-460

  25. Grundmann, S., Fuss, R., Schmid, M., Laschingera, M., Ruth, B., Schulin, R., Munch, J.-C. and Schroll, R. (2007). Application of microbial hot spots caused enhanced pesticide degradation in soils that was driven by pesticide diffusion towards these hot spots. Chemosphere 68: 511-517

  26. Levy, W., Radl, V., Ruth, B., Schmid, M., Munch, J.C. and Schroll, R. (2007). Harsh summer conditions caused structural and specific functional changes of microbial parameters in an arable soil. European Journal of Soil Science 58: 736-745

  27. Meisinger, D. B., Zimmermann, J., Ludwig, W., Schleifer, K.-H., Wanner, G., Schmid, M., Bennett, P.C., Engel, A.S., and Lee, N.M. (2007). In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically-based cave ecosystem (Lower Kane Cave, WY, USA). Environmental Microbiology 9: 1523-1534

  28. Schmid M., and Hartmann A. (2007). Molecular phylogeny and ecology of root associated diazotrophic alpha- and beta-proteobacteria. In: Associative and Endophytic Nitrogen-fixing Bacteria and Cyanobacterial Associations (eds.: C. Elmerich, W. E. Newton). New York, USA: Springer Verlag, Chapter 2, pp. 21-40

  29. Schmid M., Rothballer M., and Hartmann A. (2007). Analysis of microbial communities in soil microhabitats using fluorescence in situ hybridization. In: Modern Soil Microbiology, 2nd edition (eds.: J. D. Van Elsas, J. K. Jansson, J. Trevors). Boca Raton, Florida, USA: CRC-press, chapter 12, pp. 317-335

  30. Dazzo F.B., Schmid M., and Hartmann A. (2007). Use of immunofluorescence microscopy and fluorescence in situ hybridization combined with CMEIAS and other image analysis tools to study the autecology of soil- and plant-associated microbes. In: Manual of Environmental Microbiology, 3rd edition (eds.: C. J. Hurst, A. L. Crawford, J. L. Garland, D. A. Lipson, A. L. Mills, L. D. Stetzenbach). Washington DC, USA: ASM Press, chapter 59, pp. 712-733

    2006

  31. Schuhegger, R., Ihring, A., Gantner, S., Bahnweg, G., Knappe, C., Vogg, G., Hutzler, P., Schmid, M., Van Breusegem, F., Eberl, L., Hartmann, A. and Langebartels, C. (2006). Induction of systemic resistance in tomato plants by N-acyl-L-homoserine lactone-producing rhizosphere bacteria. Plant, Cell and Environment 29: 909-918

  32. Gantner, S., Schmid, M., Durr, C., Schuhegger, R., Steidle, A., Hutzler, P., Langebartels, C., Eberl, L., Hartmann, A. and Dazzo, F.B. (2006). In situ quantitation of the spatial scale of calling distances and population density-independent N-acylhomoserine lactone- mediated communication by rhizobacteria colonized on plant roots. FEMS Microbiology Ecology 56: 188-194

  33. Kutter, S., Hartmann, A. and Schmid, M. (2006). Colonization of barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. FEMS Microbiology Ecology 56: 262-271

  34. Rothballer, M., Schmid, M., Klein, I., Gattinger, A., Grundmann, S. and Hartmann A. (2006). Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots. International Journal of Systematic and Evolutionary Microbiology 56: 1341-1348

  35. Li, X., Fekete, A., Englmann, M., Gotz, C., Rothballer, M., Buddrus, K., Cai, C., Schroder, P., Hartmann, A., Chen, G. and Schmitt-Kopplin, P. (2006). Development and application of a method for the analysis of N-acylhomoserine lactones by solid-phase extraction and ultra high pressure liquid chromatography Journal of Chromatography 1134: 186-193

  36. Schmid M., Selesi D., Rothballer M., Schloter M., Lee N., Kandeler E., and Hartmann A. (2006). Localization and visualization of microbial community structure and activity in soil microhabitats. In: Soil Biology, Volume 6. Intestinal Microorganisms of Termites and Other Invertebrates (eds.: H. König, A. Varma). New York, USA: Springer Verlag, pp. 439-461

    2005

  37. Stein, S., Selesi, D., Schilling, Rolf., Pattis, I., Schmid, M. and Hartmann, A. (2005) Microbial activity and bacterial composition of H2-treated soils with net CO2 fixation. Soil Biology and Biochemistry 37: 1938-1945

  38. Bertaux, J., Schmid, M., Hutzler, P., Hartmann, A., Garbaye, J. and Frey-Klett, P. (2005). Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Environmental Microbiology 7: 1786-1795

  39. Rothballer, M., Schmid, M., Fekete, A. and Hartmann, A. (2005). Comparative in situ analysis of ipdC-gfpmut3 promotor fusions of Azospirillum brasilense strains Sp7 and Sp245. Environmental Microbiology 7: 1839-1846

  40. Selesi, D., Schmid, M. and Hartmann, A. (2005). Diversity of "green-like" and "red-like" ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit genes (cbbL) in differently managed agricultural soils. Applied and Environmental Microbiology 71: 175-177

  41. Schmid, M., Ng, E.Y.W., Lampidis, R., Emmerth, M., Kreft, J., Goebel, W., Wagner, M. and Schleifer, K.-H. (2005) Evolutionary history of the genus Listeria and its virulence genes. Systematic and Applied Microbiology 28: 1-18

  42. Schmid M., Lehner A., Schleifer K.-H., and Meier H. (2005). Development and application of oligonucleotide probes for in situ detection of thermotolerant Campylobacter in chicken faecal and liver samples. International Journal of Food Microbiology 105: 245-255

  43. Schmid M., Baldani J.I., and Hartmann A. (2005). The genus Herbaspirillum. In: The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd edition, release 3.19, March 18, 2005 (eds. M. Dworkin et al.). New York, USA: Springer Verlag

    2004

  44. Frommberger, M., Schmitt-Kopplin, P., Ping, G., Frisch, H., Schmid, M., Zhang, Y., Hartmann, A. and Kettrup, A. (2004). A simple and robust set-up for on-column sample preconcentration–nano-liquid chromatography – electrospray ionization mass spectrometry for the analysis of N-homoserine lactones. Analytical and Bioanalytical Chemistry 378: 1014-1020

  45. Reis, V.M., Estrada-de los Santos, P., Tenorio-Salgado, S., Vogel, J., Stoffels, M., Guyon, S., Mavingui, P., Baldani, V.L.D., Schmid, M., Baldani, J.I., Balandreau, J., Hartmann, A. and Caballero-Mellado, J. (2004). Burkholderia tropica sp. nov., a novel nitrogen-fixing, plant-associated bacterium. International Journal of Systematic and Evolutionary Microbiology 54: 2155-2162

  46. Hartmann, A., Gantner, S., Schuhegger, R., Steidle, A., Dürr, C., Schmid, M., Dazzo, F.B., Eberl, L., and Langenbartels, C. 2004 N-Acyl-homoserine lactones of rhizosphere bacteria trigger systemic resistance in tomato plants. In: Biology of Plant-Microbe Interactions, Volume 4 (eds.: B. Lugtenberg, I. Tikhonovich, N. Provorov). Saint Paul, Minnesota, USA: APS Press, pp. 554-556

  47. Schmid M., Rothballer M., Aßmus B., Hutzler P., Schloter M., and Hartmann A. 2004 Detection of microbes by confocal laser scanning microscopy. In: Molecular Microbial Ecology Manual, 2nd edition (eds.: G. A. Kowalchuk, F. J. de Bruijn, I. M. Head, A. D. L. Akkermans, J. D. van Elsas). Dordrecht, The Netherlands: Kluwer Academic Publishers, Chapter 4.03., pp. 875-910

    2003

  48. Bertaux, J., Schmid, M., Chemidlin Prevost-Boure, N., Churin, J.L., Hartmann, A., Garbaye,J. and Frey-Klett, P. (2003). In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Applied and Environmental Microbiology 69: 4243-4248

  49. Frommberger, M., Schmitt-Kopplin, P., Menzinger, F., Albrecht, V., Schmid, M., Eberl, L., Hartmann, A. and Kettrup, A. (2003). Analysis of N-acyl-L-homoserine lactones produced by Burkholderia cepacia with partial filling micellar electrokinetic chromatography - electrospray ionization-ion trap mass spectrometry. Electrophoresis 24: 3067-3074

  50. Rothballer, M., Schmid, M. and Hartmann, A. (2003). In situ localization and PGPR-effect of Azospirillum brasilense strains colonizing roots of different wheat varieties. Symbiosis 34: 261-279

  51. Shmid, M. and Hartmann, A. (2003). Molecular Phylogeny and ecology of root associated diazotrophic alfa- and beta proteobacteria. In: Associative and Endophytic Nitrogen-fixing Bacteria and Cyanobacterial Association. (Eds.) C. Elmerich and W. E. Newton. Kluwer Academic Publishers, Netherlands. Chapters 2. pp. 1-20

  52. Schmid, M., Walcher, M., Bubert, A., Wagner, M., and Schleifer, K.-H. 2003 Nucleic acid-based, cultivation-independent detection of Listeria spp. and genotypes of L. monocytogenes. FEMS Immunology and Medical Microbiolog 35: 215-225

    2001

  53. Steidle, A., Sigl, K., Schuhegger, R., Ihring, A., Schmid, M., Gantner, S., Stoffels, M., Riedel, K., Givskov, M., Hartmann, A., Langebartels, C. and Eberl, L. (2001). Visualization of N-Acylhomoserine lactone-mediated cell-cell communication between bacteria colonizing the tomato rhizosphere. Applied and Environmental Microbiology 67: 5761-5770

  54. Hentschel, U., Schmid, M., Wagner, M., Fieseler, L., Gernert, C. and J. Hacker. (2001). Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiology Ecology 35: 305-312

    1998

  55. Wagner, M., Schmid, M., Juretschko, S., Trebesius, K.-H., Bubert, A., Goebel, W. and Schleifer, K.-H. 1998 In situ detection of a virulence factor mRNA and 16S-rRNA in Listeria monocytogenes. FEMS Microbiology Letters 160: 159-168


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