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2011

1. Yi, H.-S., Yang, J. W., Ghim, S.-Y., and Ryu, C.-M. 2011. A cry for help from leaf to root: Recruiting rhizosphere microbes by aboveground insect attackleading to plant self-protection. Plant Signaling and Behavior 6: 1192-1194

2. Ryu, C.-M., Shin, J. N., Wang, Q., Mei, R., Kim, E. J., and Pan, J. G. 2011 Potential for augmentation of fruit quality by foliar application of bacilli spores on apple tree. The Plant Pathology Journal 27: 164-169

3. Choi, J., Choi, D., Lee, S., Ryu, C.-M. and Hwang, I. 2011. Cytokinin and plant immunity: Old foes or best friends. Trends in Plant Science 16: 388-394

4. Bae, H., Roberts D. P., Lim H.-S., Strem, M. D., Park, S.-C., Ryu, C.-M., Melnick, R. L., and Bailey B. A. 2011 Endophytic Trichoderma Isolates from Tropical Environments Delay Disease Onset and Induce Resistance against Phytophthora capsici in Hot Pepper Using Multiple Mechanisms. Molecular Plant-Microbe Interactions 24: 3396-3351

5. Kim, Y. C., Leveau, J., McSpadden Gardener , B. B., Pierson, E. A., Pierson, L. S. III, and Ryu CM. 2011 The multifactorial basis for plant health promotion by plant-associated bacteria. Applied and Environmental Microbiology 77:1548-1555

6. Yang, J. W., Yi, H.-S., Kim, H., Lee, B., Lee, S., Ghim, S.-Y., and Ryu, C.-M. 2011 Whitefly infestation elicits defense responses against bacterial pathogens on the leaf and root and belowground dynamic change of microflora in pepper. Journal of Ecology 99: 46-56

7. Uppalapati S. R., Ishiga Y., Ryu C.-M., Ishiga T., Wang K., Parker J., and Mysore K. S. 2011 SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis. New Phytologist 189:83-93

8. Yang, S. Y., Park, M. R., Kim, I. S., Kim, Y. C., Yang, J. W. and Ryu, C.-R. 2011 2-Aminobenzoic acid of Bacillus sp. BS107 as an ISR determinant against Pectobacterium carotovorum subsp. carotovotrum SCC1 in tobacco. Europena Journal of Plant Pathology 29: 371-378

   2010

9. Phi, Q-T., Park, Y-M., Seul, K-J., Ryu, C.-M., Park, S-H., Kim, J-G., and Ghim, S-Y. 2010. Assessment of root-associated Paenibacillus polymyxa groups on growth promotion and induced systemic resistance in pepper. Journal of Microbiology and Biotechnology 20: 1605-1613

10. Kim J. F., Jeong, H., Park, S.-Y., Kim, S.-B., Park, Y. K., Choi, S.-K., Ryu, C.-M., Hur, C.-G., Ghim, S.-Y., Oh, T. K., Kim, J. J., Park, C. S., and Park,. S.-H. 2010 Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681. Journal of Bacteriology 192: 6103-6104

11. Kwon, Y. S., Ryu, C.-M., Lee, S., Han, K. S., Lee, J. H., Lee K., Chung, W.S., Jeong, M.-J., Kim, H. K., and Bae, D.-W.2010. Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles. Planta 232: 1355-1370

12. Wangdi, T, Uppalapati, S.R., Nagaraj, S., Ryu, C.M., Bender, C.L. and Mysore, K.S. 2010 A role for chloroplast-localized Thylakoid formation 1 (THF1) in bacterial speck disease development. Plant Signaling and Behavior 5:425-427

13. Yi , H-S., Ryu, C-M. and Heil, M. 2010. Sweet smells prepare plants for future stress: airborne induction of plant disease immunity. Plant Signaling and Behavior 5: 528-531

14. Yoon, J.H., Kang, S.J., Yi, H.S., Oh, T.K., and Ryu, C-M. 2010. Rhizobium soli sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 60: 1387-1393

15. Shi, C.-L., Park, H.-B., Lee, J. S. and Ryu, C.-M. 2010 Inhibition of primary roots and stimulation of lateral root development in Arabidopsis thaliana by the rhizobacterium Serratia marcescens 90-166 is through both auxin6 dependent and-independent signaling pathways. Molecules and Cells 29: 251-258

16. Wangdi, T., Uppalapati, S.R., Nagaraj, S., Ryu, C.M., Bender, C.L., Mysore, K.S. 2010. A virus-induced gene silencing screen identifies a role for Thylakoid Formation1 in Pseudomonas syringae pv. tomato symptom development in tomato and Arabidopsis_1[W][OA]. Plant Physiolology 152: 281-292

    2009

17. Yang, JW., Yu, S. H., and Ryu, C-M. 2009. Priming of defense-related genes confers root-colonizing bacilli-elicited induced systemic resistance in pepper. The Plant Pathology Journal 25:389-399

18. Yi , H-S., Heil, M., Adame-Álvarez, R. M., Ballhorn, D. J., and Ryu, C-M. 2009. Airborne induction and priming of plant defenses against a bacterial pathogen_1[C][OA]. Plant Physiology 151: 2152-2161

19. Kwon, S.J., Jin, H.C., Lee, S., Nam, M.H., Chung, J.H., Kwon, S.I., Ryu, C.M, and Park, O.K. 2009. GDSL lipase-like 1 regulates systemic resistance associated with ethylene signaling in Arabidopsis. The Plant Journal 58:235-245

20. Ham, M-S, Y-M. Park, H. R. Sung., M. Sumayo., C-M. Ryu, S.-H. Park, and S.-Y.Ghim. 2009. Characterization of Rhizobacteria Isolated from Family Solanaceae Plants in Dokdo Island. Korean Journal of Microbiology Biotechnology 37: 110–117

21. Yang, JW., Kloepper, J. W., Ryu, C.-M. 2009. Rhizosphere bacteria help plant tolerate against abiotic stress. Trends in Plant Science 16:1-4

    2008

22. Ryu, C-M, Yi, H-S, Ahn, Y-R, Kim, W-I, Zhang, H, Park S-H, Park, C-S, Farag, M. A., Paré, P W., and Kloepper, J. W. 2008 Dynamic communication between plants and rhizobacteria via volatile signals In: Biology of Molecular Plant-Microbe Interactions, Vol. 6 (M. Lorito, S. Woo and F. Scala, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN.

23. Lee, B., Kim, D., and Ryu, C.-M. 2008 A super-absorbent polymer combination promotes bacterial aggressiveness uncoupled from the epiphytic population. The Plant Pathology Journal 24: 283-288

24. Kim, M. S., Cho, S. M., Kang, E. Y., Im, Y., Hwangbo, J. H., Kim, Y. C., Ryu, C.-M., Yang, K. Y., Chung, G. C., and Cho, B. H. 2008 Galactinol is a Signaling Component of the Induced Systemic Resistance Caused by Pseudomonas chlororaphis O6 Root Colonization. Molecular Plant-Microbe Interactions 21: 1643-1653

25. Park, S.-J., S.-Y. Park., C.-M. Ryu, S.-H. Park, and J.-K. Lee. 2008 The role of AIIA, a Quorum-Quenching enzyme from Bacillus thuringiensis, on the Rhizosphere competence. Journal of Microbiology and Biotechnology 18: 1518-1521

26. Phi, Q-T, Park ,Y-M, Ryu, C-M., Park, S.-H, and Ghim, S-Y. 2008 Functional Identification and Expression of Indole-3-Pyruvate Decarboxylase from Paenibacillus polymyxa E681. Journal of Microbiology and Biotechnology 18: 1235-1244

27. Park, S-Y, Kim, R., Ryu, C-M., Choi, S-K., Lee, C-H., Kim, J-G., Park, S-H. 2008 Citrinin, a mycotoxin from Penicillium citrinum, plays a role in inducing motility of Paenibacillus polymyxa. FEMS Microbiology Ecology 65: 229-237

28. Cho, S. M., Kang, B. R., Han, S. H., Anderson, A. J., Park, J.-Y., Lee, Y.-H., Cho, B. H., Yang, K.-Y., Ryu, C.-M., and Kim. Y. C., 2008 2R,3R-butanediol, a bacterial volatile produced by Pseudomonas chlororaphis O6 is involved in induction of systemic tolerance to drought in Arabidopsis thaliana. Molecular Plant-Microbe Interactions 8: 1067-1075

29. Park, K. S. J W. Kloepper, and Ryu, C-M. 2008 Rhizobacterial exopolysaccharides elicit induced resistance on cucumber Journal of Microbiology and Biotechnology 18: 1095-1100

30. Phi, Q. T., Oh, S.-H., Park, Y-M., Park, S.-H., Ryu, C.-M., and Ghim, S.-Y. 2008. Isolation and Characterization of Transposon-Insertional Mutants from Paenibacillus polymyxa E681 Altering the Biosynthesis of Indole-3-Acetic Acid. Current Microbiology 56: 524-530

31. Kim, Y-C, Park, S. Y., Ryu, C.-M. and Park, J. M. 2008, Molecular characterization of a pepper C2 domain-containing SRC2 protein implicated in resistance against host and non-host pathogens and abiotic stresses. Planta 227: 1169-1179

32. Ajith A., S. R. Uppalapati, C-M. Ryu, A. Stacy, L. Kang, Y. Tang and K. Mysore. 2008. Salicylic acid and systemic acquired resistance play a role in attenuating the crown gall disease caused by Agrobacterium tumefaciens. Plant Physiology 146: 703-715

33. Seul, K.-J., Park, S. H., Ryu, C.-M., Lee, Y.-H. and Ghim, S.-Y. 2008 Proteome Analysis of Paenibacillus polymyxa E681 Affected by Barley. Journal of Microbiology and Biotechnology 17:934-944

    2007

34. Ryu, C-M, B. R. Kang, S. H. Han, S, M, Cho, J. W. Kloepper, A. J. Anderson, and Y. C. Kim. 2007 Tobacco cultivars vary in induction of systemic resistance against Cucumber mosaic virus and growth promotion by Pseudomonas chlororaphis O6 and its gacS mutant. European Journal of Plant Pathology 119:383-390

35. Zhang, H., Kim, M.S., Krishnamachari, V., Payton, P., Sun, Y., Grimson, M., Farag, M.A., Ryu, C.M., Allen, R., Melo, I.S. and Pare, P.W. 2007 Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis Planta 226: 839-851

36. Jeong, J.-H., Jeong, D.-E., Lee, S.-J., Seul, K.-J., Ryu, C.-M., Park, S.-H., Ghim, S.-Y. 2007 The effects of wood vinegar on growth and resistance of peppers Korean Journal of Microbiology and Biotechnology 35: 41-44

37. Yi, S. Y., Choi D., Ryu, C.-M. 2007 Implication of a pepper h-type thioredoxin in type I- and II-nonhost resistance to Xanthomonas axonopodis. Plant Biotechnology Reports 1: 117-123

38. Cho, H.-S., Park, S.-Y., Ryu, C.-M., Kim, J., Kim, J.-G., Park, S.-H. 2007 Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium. FEMS Microbiology Ecology 60: 14-23

39. Ryu, C-M, Murphy, J. F., Reddy, M. S. and Kloepper, J. W. 2007 A two strain mixture of rhizobacteria elicits induction of systemic resistance against Pseudomonas syringae and Cucumber mosaic virus coupled to promote plant growth on Arabidopsis thaliana. Journal of Microbiology and Biotechnology 17: 280-286

40. Kang, S. H., Cho, H-S., Cheong H., Ryu, C-M., Kim, J. F., and Park, S. H. 2007 Two Bacterial Endophytes, Pseudomonas rhodesiae and Pantoea ananatis, Elicit Plant Growth Promotion and Plant Defense on Pepper. Journal of Microbiology and Biotechnology 17: 96-103

41. Anand, A., Vaghchhipawala, Z., Ryu, C.-M., Kang, L., Wang, K., del-Pozo, O., Martin, G. B., and Mysore, K. S. 2007 Identification and characterization of genes involved in Agrobacterium-mediated plant transformation by virus-induced gene silencing. Molecular Plant-Microbe Interactions 19: 41-52

    2006

42. Ryu, C. M., Kima, J., Choi, o., Kima, S. H. and Park, C. S. 2006 Improvement of biological control capacity of Paenibacillus polymyxa E681 by seed pelleting on sesame. Biological Control: 39: 282-289
43. Kloepper, J. W. and. Ryu, C. M. 2006 Bacterial Endophytes as Elicitors of Induced Systemic Resistance in Who is an endophyte? Schulz/ Boyle/ Sieber Eds, Springer-Verlag Berlin Heidelberg, pp. 33-52. (A Book chapter)

44. Farag, M. A., Ryu, C.-M., Sumner, L. W., Paré P. W. 2006 Profiling of rhizobacterial emissions reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 67: 2262-2268

45. Chung, E, Ryu, C-M, Oh, S-K, and Choi D. 2006 The essential role of pepper CaSgt1 and CaSkp1 genes in plant development and basal resistance. Physiologia Plantanum 126: 605-612

46. Oh, S-K, Lee, S, Chung, E, Park, J. M, Yu, S. H., Ryu, C.-M., and Choi, D. 2006 Insight into Types I and II nonhost resistance using expression patterns of defense-related genes in tobacco. Planta 213: 1102-1107

47. Kim, M., Lee, S., Park, K., Jeong, E.-J., Ryu, C.-M., Choi, D., and Pai, H.-S. 2006 Comparative microarray analysis of programmed cell death induced by proteasome malfunction and hypersensitive response in plants. Biochemical and Biophysical Research Communications Biochemical and Biophysical Research Communications 342:514-521

48. Chung, E., Ryu, c. M., Oh, S.-K., Kim, R. N., Park, J. M. , Cho, H. S., Lee, S., Moon, J. S., Park, S.-H. and Choi, D. 2006 Suppression of pepper SGT1 and SKP1 causes severe retardation of plant growth and compromises basal resistance. Physiologia Plantarum 126: 605-617

    2005

49. Jeong, H., Park, S-Y., Ryu, C-M., Kim, J. F., W. Choi, O. H., Park, S. Y., Park, S., and Park, C-S. 2005. Diversity of root-associated Paenibacillus spp. in winter crops from southern part of Korea. Journal of Microbiology and Biotechnology 15: 1286-1298

50. Ryu, C-M., Kim, J. W. Choi, O. H., Park, S. Y., Park, S. H., and Park, C-S. 2005. Nature of a root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. Journal of Microbiology and Biotechnology 15: 984- 991

51. Pare, P. W., Farag, M. A., Ryu, C.-M, and Kloepper, J. W. 2005. Elicitors and priming agents initiate plant defense responses. Photosynthesis research 85: 149-159

52. Ryu, C. M., Hu, C. H., Locy, R. D., and Kloepper, J. W. 2005. Study of mechanisms for plant growth promotion elicited by rhizobacteria in Arabidopsis thaliana. Plant and Soil 286: 285-292

53. Ryu, C.-M, Farag, M. A., Pare, P. W., and Kloepper, J. W. 2005. Invisible signals from the underground: bacterial volatiles elicit plant growth promotion and induce systemic resistance. The Plant Pathology Journal 21: 7-12.

    2004

54. Choi, O. H., Kim, J. W., Ryu, C.-M., and Park, C. S. 2004. Colonization and population changes of a biocontrol agent, Paenibacillus polymyxa E681, in seeds and roots. The Plant Pathology Journal 20: 97-102

55. Kloepper, J. W., Ryu, C.-M., and Zhang. S. 2004. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology 94: 1259-1266

56. Ryu C.-M, Anand A., Kang L., Mysore K. S. 2004. Agrodrench: a novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species. The Plant Journal 40: 322-331

57. Mysore, K. S. And Ryu. C. -M. 2004. Nonhost resistance: How much do we know? Trends in Plant Science 9: 97-104

58. Ryu, C. -M., Murphy, J. F., Mysore, K. S., and Kloepper, J. W. 2004. Plant Growth-Promoting Rhizobacteria Protect Systemically Arabidopsis thaliana against Cucumber mosaic virus by a salicylic acid and NPR1-independent and jasmonic acid-dependent signaling pathway. The Plant Journal 39: 381-392

59. Ryu, C. M., Farag, M., Hu, C. H., Reddy, M. S., Pare, P., and Kloepper, J. W. 2004. Bacterial volatiles induced systemic resistance in Arabidopsis. Plant Physiology 134: 1017-1026

    2003

60. Ryu, C. M., Hu, C. H., Reddy, M. S., and Kloepper, J. W. 2003 Different signaling pathways of induced resistance by rhizobacteria in Arabidopsis thaliana against two pathovars of Pseudomonas syringae. New Phytologist 160: 413-420

61. Spencer, M., Ryu, C. M. Kim, Y. C. and Anderson, A. 2003. Induced defence in tobacco by Pseudomonas chlororaphis strain O6 involves at least the ethylene pathway. Physiological and Molecular Plant Pathology 63: 27-34

62. Murphy, J. F., Reddy, M. S., Ryu, C.-M., Kloepper, J. W. and Li, R. 2003 Rhizobacteria-Mediated Growth Promotion of Tomato Leads to Protection Against Cucumber mosaic virus. Phytopathology 93:1301-1307

63. Ryu, C. M., Farag, M., Hu, C. H., Reddy, M. S., H-S. Wei, Pare, P., and Kloepper, J. W. 2003. Bacterial volatiles promote growth in Arabidopsis. Proceedings of National Academy of Sciences in USA 100: 4927-4932

    2002

64. Yan, Z., Reddy, M. S., Ryu, C. M., McInroy, J., Woods, F., Wilson, M., and Kloepper, J. W. 2002. Induced systemic protection against tomato late blight elicited by plant growth-promoting rhizobacteria. Phytopathology 92: 1329-1333

    1998

65. Kim, J. W., Choi, O. H., Kang, J. H., Ryu, C. M., Jeong, M. J., Kim, J. W., and Park, C. S. 1988. Trancing of some root rolonizing Pseudomonas in the rhizosphere using lux gene introduction bacteria. Korean Journal of Plant Pathology 14: 13-18

1. Kloepper, J. W. Gutiérrez-Estrada, A. and. Ryu, C. M. 2005. Progress toward implementation of Bacillus spp. for plant growth promotion and biological control. In Rhizosphere 2004-Perspectives and Challenges. A Tribute to Lorenz Hiltner. Hartmann, A., Schmid, M., Wenzel, W. and Hisinger, Ph. (eds.). GSF, Neuherberg pp

2. Ryu, C.-M, Farag, M. A., Hu, C. H., Reddy, M. S., Paré, P. W., and Kloepper, J. W. 2004. Volatiles produced by PGPR elicit plant growth promotion and induced resistance in Arabidopsis. In: 6th International Workshop on Plant Growth Promoting Rhizobacteria (M.S. Reddy, M. Anandaraj, S.J. Eapen, Y.R. Sarma, J.W. Kloepper, eds.), pp. 93-100. Indian Institute of Spices Research, Calicut, India

3. Kloepper, J. W. and. Ryu, C. M. 2006 Bacterial Endophytes as Elicitors of Induced Systemic Resistance In: Who is an endophyte? Schulz/ Boyle/ Sieber Eds, Springer-Verlag Berlin Heidelberg pp. 33-52.

4. Reddy, M. S., Ryu, C. M., and Kloepper, J. W. 2001. Can bacteria boost tomato growth and yield? Hightlight of Agricultural Research Volume 48 No. 2 Summer 2001. http://www.ag.auburn.edu/resinfo/highlightsonline/summer01/sum-reddy.html

5. Kim, S.H., C.S. Park, J.B. Park, C.M. Ryu, J.W. Kim and C.W. Kang. 1998. Accelerated plant growth and biological control of soil-borne diseases using useful microorganisms in integrated mechanization system of Sesame (Sesamum indicum L.) production in Korea. 25th International Seed Testing Congress Seed Symposium 116p. Pretoria, Republic of South Africa.

6. Ryu, C-M. and Park, C-S. 1997. Enhancement of plant growth induced by endospore forming PGPR strain, Bacillus polymyxa E681. Page 186-190 in : Plant Growth-Promoting Rhizobacteria- Present Status and Future Prospects. Proc. Int. Workshop on Plant Growth-Promoting Rhizobacteria, 4th. A. Ogoshi, K. Kobayshi, Y. Homma, F. Komada, N. Knodo, S. Akino, eds. Nakanishi Printing, Sapporo, Japan