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Choong-Min Ryu

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  1. Lee, S.M., Ryu, C.M. 2021. Algae as New Kids in the Beneficial Plant Microbiome. Frontiers in Plant Science. 12:599742. doi: 10.3389/fpls.2021.599742.
  2. Kong, H.G., Song, G.C., Sim, H.J., Ryu, C.M. 2021. Achieving similar root microbiota composition in neighbouring plants through airborne signalling. ISME Journal. 15, 397–408. doi: 10.1038/s41396-020-00759-z.
  3. Kim, C., Ryu, D.K., Lee, J., Kim, Y.I., Seo, J.M., Kim, Y.G., Jeong, J.H., Kim, M., Kim, J.I., Kim, P., Bae, J.S., Shim, E.Y., Lee, M.S., Kim, M.S., Noh, H., Park, G.S., Park, J.S., Son, D., An, Y., Lee, J.N., Kwon, K.S., Lee, J.Y., Lee, H., Yang, J.S., Kim, K.C., Kim, S.S., Woo, H.M., Kim, J.W., Park, M.S., Yu, K.M., Kim, S.M., Kim, E.H., Park, S.J., Jeong, S.T., Yu, C.H., Song, Y., Gu, S.H., Oh, H., Koo, B.S., Hong, J.J., Ryu, C.M., Park, W.B., Oh, M., Choi, Y.K., Lee, S.Y. 2021. A therapeutic neutralizing antibody targeting receptor binding domain of SARS-CoV-2 spike protein. Nature Communications. 12, 288. doi: 10.1038/s41467-020-20602-5.
  4. Hwang, E.H., Chung, H., Kim, G., Oh, H., An, Y.J., Kang, P., Ryu, C.M, Park, J.H., Hong, J., Koo, B.S. 2021. Host- and Species-Dependent Quasispecies Divergence of Severe Acute Respiratory Syndrome Coronavirus-2 in Non-human Primate Models. Frontiers in Microbiology. 12:694897. doi: 10.3389/fmicb.2021.694897.
  5. Cellini, A., Spinelli, F., Donati, I., Ryu, C.M., Kloepper, J.W. 2021. Bacterial volatile compound-based tools for crop management and quality. Trends in Plant Science. 26(9): 968-983. doi: 10.1016/j.tplants.2021.05.006.
  6. Silva Dias, B.H., Jung, S.H., de Castro Oliveira, J.V., Ryu, C.M. 2021. C4 Bacterial Volatiles Improve Plant Health. Pathogens. 10, 682. doi: 10.3390/pathogens10060682.
  7. Norton, A.J., Wiysonge, C.S.,Habarugira, J.M., White, N.J., Tufet Bayona, M., Hagen, H.E., Archer, J.E., Alobo, M.S., Carson, G.L., Garcia, P.J., Maciel, R.M.B., Ramakrishnan, U., Ryu, C.M., Rees, H., Ntoumi, F., Tshangela, A.N., Faiz, M.A., Snewin, V.A., Mburu, S.W., Miles, R.E.E., Okware, B.G.A., Vaux, R., Sowinski, S., Atuire, C.A., Kaushic, C. 2021. Priorities for COVID-19 research response and preparedness in low-resource settings. The Lancet. 397(10288): 1866-1868. doi: 10.1016/S0140-6736(21)00980-6.
  8. Sharifi, R., Ryu, C.M. 2021. Social networking in crop plants: Wired and wireless cross-plant communications. Plant Cell and Environment. 44: 1095– 1110. doi: 10.1111/pce.13966.
  9. Park, Y.S., Park, J.S., Lee, S., Jung, S.H., Kim, S.K., Ryu, C.M. 2021. Simultaneous profiling of Arabidopsis thaliana and Vibrio vulnificus MO6-24/O transcriptomes by dual RNA-seq analysis. Computational and Structural Biotechnology Journal. 19, 2084-2096. doi: 10.1016/j.csbj.2021.04.008.
  10. Park Y.S., Ryu C.M. 2021. Understanding Plant Social Networking System: Avoiding Deleterious Microbiota but Calling Beneficials. International Journal of Molecular Sciences. 22(7):3319. doi: 10.3390/ijms22073319.
  11. Lee, S.M., Kong, H.G., Song, G.C., Ryu, C.M. 2021. Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease. ISME Journal. 15, 330–347. doi: 10.1038/s41396-020-00785-x.
  12. 2020

  13. Kim, H., Lee, S., Seo, H.W., Kang, B., Moon, J., Lee, K.G., Yong, D., Kang, H., Jung, J., Lim, E.K., Jeong, J., Park, H.G., Ryu, C.M., Kang, T. 2020. Clustered Regularly Interspaced Short Palindromic Repeats-Mediated Surface-Enhanced Raman Scattering Assay for Multidrug-Resistant Bacteria. ACS Nano. 14 (12), 17241-17253. doi: 10.1021/acsnano.0c07264.
  14. Lee, Y., Kim, Y.S., Balaraju, K., Seo, Y.S., Park, J., Ryu, C.M., Park, S.H., Kim6, J.F., Kang, S., Jeon, Y. 2020. Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation. Scientific Reports. 10, 16586. doi: 10.1038/s41598-020-73716-7.
  15. Jung J., Kim S.K., Jung S.H., Jeong M.J., Ryu C.M. 2020 Sound Vibration-Triggered Epigenetic Modulation Induces Plant Root Immunity Against Ralstonia solanacearum. Frontiers in Microbiology. 11:1978. doi: 10.3389/fmicb.2020.01978.
  16. Jung, J., Kim, J.S., Taffner, J., Berg, G., Ryu, C.M. 2020. Archaea, tiny helpers of land plants. Computational and Structural Biotechnology Journal. 18, 2494-2500. doi: 10.1016/j.csbj.2020.09.005.
  17. Son, Y.S., Ki, S.J., Thanavel, R., Kim, J.J, Lee, M.O., Kim, J., Jung, C.R., Han, T.S., Cho, H.S., Ryu, C.M., Kim, S.H., Park, D.S., Son, M.Y. 2020. Maturation of human intestinal organoids in vitro facilitates colonization by commensal lactobacilli by reinforcing the mucus layer. The FASEB Journal.34: 9899– 9910. doi: 10.1096/fj.202000063R.
  18. Seo S.O., Park S.K., Jung S.C., Ryu C.M., Kim J.S. 2020. Anti-Contamination Strategies for Yeast Fermentations. Microorganisms. 8(2):274. doi: 10.3390/microorganisms8020274.
  19. Lee, H., Son, Y.S., Lee, M.O., Ryu, J.W., Park, K., Kwon, O., Jung, K.B., Kim, K., Ryu, T.Y., Baek, A., Kim, J., Jung, C.R., Ryu, C.M., Park, Y.J., Han, T.S., Kim, D.S., Cho, H.S., Son, M.Y.2020. Low-dose interleukin-2 alleviates dextran sodium sulfate-induced colitis in mice by recovering intestinal integrity and inhibiting AKT-dependent pathways. Theranostics. 10(11):5048-5063. doi: 10.7150/thno.41534.
  20. Kim, M.H., Jeong, H., Sim, Y.M., Lee, S., Yong, D., Ryu, C-M., Choi, J-Y. 2020. Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications. PLoS ONE. 15(2): e0229416. doi: 10.1371/journal.pone.0229416.
  21. Kim, B.S., Kim, J-H., Choi, S., Park, S., Lee, E-Y., Koh, S., Ryu, C-M., Kim, S-Y., Kim, M.H. 2020. MARTX toxin-stimulated interplay between human cells and Vibrio vulnificus. mSphere. 5:e00659-20. doi: 10.1128/mSphere.00659-20.
  22. Kim, J.-S., Yoon, S.-J., Park, Y.-J., Kim, S.-Y., Ryu, C.-M. 2020. Crossing the kingdom border: Human diseases caused by plant pathogens. Environmental Microbiology. 22: 2485-2495. doi: 10.1111/1462-2920.15028.
  23. Park, S.H., Yoon, S.J., Choi, S., Kim, J-S., Lee, M-S., Lee, S-J., Lee, S-H., Min, J-K., Son, M-Y., Ryu, C-M., Yoo, J., Park, Y-J. 2020. Bacterial type III effector protein HopQ inhibits melanoma motility through autophagic degradation of vimentin. Cell Death and Disease. 11, 231. doi: 10.1038/s41419-020-2427-y.
  24. Lee, S.-M., Kim, S.-K., Lee, N., Ahn, C.-Y., Ryu, C.-M. 2020. d-Lactic acid secreted by Chlorella fusca primes pattern-triggered immunity against Pseudomonas syringae in Arabidopsis. Plant Journal. 102: 761-778. doi: 10.1111/tpj.14661.
  25. Lee, S-M., Lee, B., Shim, C-K., Chang, Y-K., Ryu, C-M. 2020. Plant anti-aging: Delayed flower and leaf senescence in Erinus alpinus treated with cell-free Chlorella cultivation medium. Plant Signaling & Behavior. 15(6), 1763005. doi: 10.1080/15592324.2020.1763005.
  26. 2019

  27. Jo, S.H., Lee, J., Park, E., Kim, D.W>, Lee, D.H., Ryu, C.M., Choi, D., Park, J.M. 2019. A human pathogenic bacterium Shigella proliferates in plants through adoption of type III effectors for shigellosis. Plant Cell and Environment. 42: 2962– 2978. doi: 10.1111/pce.13603.
  28. Jeong, H., Choi, S-K., Ryu, C-M., Park, S-H. 2019. Chronicle of a Soil Bacterium: Paenibacillus polymyxa E681 as a Tiny Guardian of Plant and Human Health. Frontiers in Microbiology. 10:467. doi: 10.3389/fmicb.2019.00467.
  29. Heo, J., Kim, S., Cho, D-H., Song, G.C., Kim, H-S., Ryu, C-M. 2019. Genome-wide exploration of Escherichia coli genes to promote Chlorella vulgaris growth. Algal Research. 38, 101390. doi: 10.1016/j.algal.2018.101390.
  30. Song, G.C., Im, H., Jung, J., Lee, S., Jung, M.-Y., Rhee, S.-K. and Ryu, C.-M. 2019. Plant growth-promoting archaea trigger induced systemic resistance in Arabidopsis thaliana against Pectobacterium carotovorum and Pseudomonas syringae. Environmental Microbiology. 21: 940-948. doi: 10.1111/1462-2920.14486.
  31. Song, G.C., Riu, M., Ryu, CM. 2019. Beyond the two compartments Petri-dish: optimising growth promotion and induced resistance in cucumber exposed to gaseous bacterial volatiles in a miniature greenhouse system. Plant Methods. 15, 9. doi: 10.1186/s13007-019-0395-y.
  32. Lee, H.S., Lee, S., Kim, J-S., Lee, H-R., Shin, H-C., Lee, M-S., Jin, K.S., Kim, C-H., Ku, B., Ryu, C-M., Kim S.J. 2019. Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence. Frontiers in Microbiology. 9:3329. doi: 10.3389/fmicb.2018.03329.
  33. Kong, H.G., Song, G.C. and Ryu, C.-M. 2019. Inheritance of seed and rhizosphere microbial communities through plant–soil feedback and soil memory. Environmental Microbiology Reports. 11: 479-486. doi: 10.1111/1758-2229.12760.
  34. Kong, H.G., Kim, H.H., Chung, J., Jun, J., Lee, S., Kim, H-M., Jeon, S., Park, S.G., Bhak, J., Ryu, C-M. 2019. The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax. Cell Reports. 26(9), 2451-2464. doi: 10.1016/j.celrep.2019.02.018.
  35. 2018

  36. Kong, H.G., Shin, T.S., Kim, T.H., Ryu C-M. 2018. Stereoisomers of the Bacterial Volatile Compound 2,3-Butanediol Differently Elicit Systemic Defense Responses of Pepper against Multiple Viruses in the Field. Frontiers in Plant Science. 9:90. doi: 10.3389/fpls.2018.00090.
  37. Kim, S-K., Jeong, M-J., Ryu, C-M. 2018. How do we know that plants listen: Advancements and limitations of transcriptomic profiling for the identification of sound-specific biomarkers in tomato. Plant Signaling & Behavior 13:12, e1547576, doi: 10.1080/15592324.2018.1547576.
  38. Kim, J.Y., Kim, S-K., Jung, J., Jeong, M-J., Ryu, C-M. 2018. Exploring the sound-modulated delay in tomato ripening through expression analysis of coding and non-coding RNAs. Annals of Botany 122(7), 1231–1244. doi: 10.1093/aob/mcy134.
  39. Jung, J., Kim, S-K., Kim, J.Y., Jeong, M-J., Ryu, C-M. 2018. Beyond Chemical Triggers: Evidence for Sound-Evoked Physiological Reactions in Plants. Frontiers in Plant Science. 9:25. doi: 10.3389/fpls.2018.00025.
  40. Chung, J-H., Jeong, H., Ryu, C-M. 2018. Complete genome sequences of Enterobacter cancerogenus CR-Eb1 and Enterococcus sp. strain CR-Ec1, isolated from the larval gut of the greater wax moth, Galleria mellonella. Genome Announcements. 6:e00044-18. doi: 10.1128/genomeA.00044-18.
  41. Yoon, S.-J., Park, Y.-J., Kim, J.-S., Lee, S., Lee, S.-H., Choi, S., Min, J.-K., Choi, I., Ryu, C.-M. 2018. Pseudomonas syringae evades phagocytosis by animal cells via type III effector-mediated regulation of actin filament plasticity. Environmental Microbiology. 20: 3980-3991. doi: 10.1111/1462-2920.14426.
  42. Song, G.C., , Ryu, C.M. 2018. Evidence for Volatile Memory in Plants: Boosting Defence Priming through the Recurrent Application of Plant Volatiles. Molecules and Cells. 41:724-732. doi: 10.14348/molcells.2018.0104.
  43. Sharifi, R., Ryu, C-M. 2018. Sniffing bacterial volatile compounds for healthier plants. Current Opinion in Plant Biology. 44, 88-97. doi: 10.1016/j.pbi.2018.03.004.
  44. Sharifi, R., Lee, S.-M., Ryu, C.-M. 2018. Microbe-induced plant volatiles. New Phytologist. 220: 684-691. doi: 10.1111/nph.14955.
  45. Sharifi, R., Ryu, C-M. 2018. Biogenic Volatile Compounds for Plant Disease Diagnosis and Health Improvement. Plant Pathology Journal. 34(6):459-469. doi: 10.5423/PPJ.RW.06.2018.0118.
  46. Sharifi, R., Ryu, C-M. 2018. Revisiting bacterial volatile-mediated plant growth promotion: lessons from the past and objectives for the future. Annals of Botany. 122(3), 349–358. doi: 10.1093/aob/mcy108.
  47. Senthil-Kumar, M., Wang, M., Chang, J., Ramegowda, V., del Pozo, O., Liu, Y., Doraiswamy, V., Lee, H-K., Ryu, C-M., Wang, K., Xu, P., Van Eck, J., Chakravarthy, S., Dinesh-Kumar, S.P. Martin, G.B., Mysore, K.S. 2018. Virus-induced gene silencing database for phenomics and functional genomics in Nicotiana benthamiana. Plant Direct. 2: 1– 9. doi: 10.1002/pld3.55.
  48. Park, J.Y., Kang, B.R., Ryu, C.-M., Anderson, A.J., Kim, Y.C. 2018. Polyamine is a critical determinant of Pseudomonas chlororaphis O6 for GacS-dependent bacterial cell growth and biocontrol capacity. Molecular Plant Pathology. 19: 1257-1266. doi: 10.1111/mpp.12610.
  49. Lee, H-R., Lee, S., Park, S., van Kleeff. P.J.M., Schuurink, R.C., Ryu, C-M. 2018. Transient Expression of Whitefly Effectors in Nicotiana benthamiana Leaves Activates Systemic Immunity Against the Leaf Pathogen Pseudomonas syringae and Soil-Borne Pathogen Ralstonia solanacearum. Frontiers in Ecology and Evolution. 6:90. doi: 10.3389/fevo.2018.00090.
  50. 2017

  51. Kang, Y.M., Choi, J.E., Komakech, R., Park, J.H., Kim, D.W., Cho, K.M., Kang, S.M., Choi, S.H., Song, K.C., Ryu, C-M., Lee, K.C., Lee, J-S. 2017. Characterization of a novel yeast species Metschnikowia persimmonesis KCTC 12991BP (KIOM G15050 type strain) isolated from a medicinal plant, Korean persimmon calyx (Diospyros kaki Thumb). AMB Express. 7, 199. doi: 10.1186/s13568-017-0503-1.
  52. Farag, M., Song, G., Park, Y-S., Audrain, B., Lee, S., Ghigo, J-M., Kloepper J.W., Ryu, C-M. 2017. Biological and chemical strategies for exploring inter- and intra-kingdom communication mediated via bacterial volatile signals. Nature Protocols. 12, 1359–1377. doi: 10.1038/nprot.2017.023.
  53. Amavizca, E., Bashan, Y., Ryu, C.-M., Farag, M.A., Bebout, B.M., de-Bashan, L.E. 2017. Enhanced performance of the microalga Chlorella sorokiniana remotely induced by the plant growth-promoting bacteria Azospirillum brasilense and Bacillus pumilus. Scientific Reports-Nature. 7: 41310. doi:10.1038/srep41310.
  54. Pinto N.A., D’Souza, R., Hwang, I., Choi, J., In, Y.H., Park H.S., Ryu C., Yong D., Lee K. 2017. Whole genome and transcriptome analysis reveal MALDI-TOF MS and SDS-PAGE have limited performance for the detection of the key outer membrane protein in carbapenem-resistant Klebsiella pneumoniae isolates. Oncotarget. 8: 84818-84826. doi: 10.18632/oncotarget.19005.
  55. Lee, S-M, Kong, H.G., Ryu, C-M. 2017. Are Circular RNAs New Kids on the Block? Trends in Plant Science. 22(5), 357-360. doi: 10.1016/j.tplants.2017.03.007.
  56. Lee, G., Lee, SH., Kim, K., Ryu, C-M. 2017. Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens. Scientific Reports. 7, 39432. doi: 10.1038/srep39432.
  57. Lee, D.S., Kim, Y.C., Kwon, S.J., Ryu, C-M., Park, O.K. 2017. The Arabidopsis Cysteine-Rich Receptor-Like Kinase CRK36 Regulates Immunity through Interaction with the Cytoplasmic Kinase BIK1. Frontiers in Plant Science. 8:1856. doi: 10.3389/fpls.2017.01856.
  58. Lee, H.R., Jung, J., Riu, M., and Ryu, C.M. 2017. A New Frontier for Biological Control against Plant Pathogenic Nematodes and Insect Pests I: By Microbes. Research in Plant Disease. 23(2): 114-149. doi: 10.5423/RPD.2017.23.2.114.

  59. Farag, M.A., Song, G.C., Park, Y.S., Audrain, B., Lee, S., Ghigo, J. M., Kloepper, J.W. and Ryu, C.M. 2017. Biological and chemical strategies for exploring inter-and intra-kingdom communication mediated via bacterial volatile signals. Nature Protocols. 12(7), 1359-1377. doi: 10.3389/fpls.2017.01856.

  60. Lee, D.S., Kim, Y.C., Kwon, S.J., Ryu, C.M., and Park, O.K. 2017. The Arabidopsis Cysteine-Rich Receptor-Like Kinase CRK36 Regulates Immunity through Interaction with the Cytoplasmic Kinase BIK1. Frontiers in Plant Science. 8: 1856. doi: 10.3389/fpls.2017.01856.

  61. Lee, S.M., Kong, H.G., and Ryu, C.M. 2017. Are Circular RNAs New Kids on the Block? Trend in Plant Science. 22(5): 357-360.


  62. Weisskopf, L., Ryu, C.M., Raaijmakers, J.M., and Garbeva, P. 2016. Editorial: Smelly Fumes: Volatile-Mediated Communication between Bacteria and Other Organisms. Frontiers in Microbiology. 7: 2031.

  63. Park, Y.S., and Ryu, C.M. 2016. Insect stings to change gear for healthy plant: Improving maize drought tolerance by whitefly infestation. Plant Signaling and Behavior. 11:e1179420.

  64. Park, Y.S., Lee, B., Ryu, C.M. 2016. Getting to PTI of bacterial RNAs: Triggering plant innate immunity by extracellular RNAs from bacteria. Plant Signaling and Behavior. 11:e1198866.

  65. Lee, G.H., and Ryu, C.M. 2016. Spraying of leaf-colonizing Bacillus amyloliquefaciens protects pepper from Cucumber mosaic virus. Plant Disease. 100(10): 2099-2105.

  66. Panstruga, R. 2016. Bacterial RNA – a new MAMP on the block? New Phytologist. 209: 458–460.

  67. Yi, H.S., Ahn, Y-R., Song, G.C., Ghim, S.Y. Lee, S., Lee, G., and Ryu, C.M. 2016. Impact of a Bacterial Volatile 2,3-Butanediol on Bacillus subtilis Rhizosphere Robustness. Frontiers in Microbiology. 7:993. doi: 10.3389/fmicb.2016.00993.

  68. Sharifi, R., and Ryu, C.M. 2016. Making healthier or killing enemies? Bacterial volatile-elicited plant immunity plays major role upon protection of Arabidopsis than the direct pathogen inhibition Communicative and Integrative Biology 9:4-e1197445. DOI: 10.1080/19420889.2016.1197445.

  69. Song, G-C., Sim, H.J., Kim, S.G., and Ryu, C.M. 2016. Root-mediated signal transmission of systemic acquired resistance against above-ground and below-ground pathogens. Annals of Botany doi:10.1093/aob/mcw152.

  70. Chung, J., Song, G.C., Ryu, C.M. 2016. Sweet scents from good bacteria: Case studies on bacterial volatile compounds for plant growth and immunity. Plant Molecular Biology 90:677-687.

  71. Koh, S., Hwang, J., Guchhait, K., Lee, E.G., Kim, S.Y., Kim, S., Lee, S., Chung, J.M., Jung, H.S., Lee, S.J., Ryu, C.M., Lee, S.G., Oh, T.K., Kwon, O., and Kim, M.H. 2016. Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System. Journal of Biological Cheminstry 191: 8575-8590.

  72. Kim, B., Song, G. C., and Ryu, C.M., 2016. Root Exudation by Aphid Leaf Infestation Recruits Root-associated Paenibacillus spp. to Lead Plant Insect Susceptibility. Journal of Microbiology and Biotechnology 26:549-557.

  73. Im, H., Kim, K.M., Lee, S.H., and Ryu, C.M, 2016. Functional metagenome mining of soil for novel gentamicin resistance genes. Journal of Microbiology and Biotechnology 26:521-529.

  74. Sharifi, R., and Ryu, C.M. 2016. Are bacterial volatile compounds poisonous odors to a fungal pathogen Botrytis cinerea, alarm signals to Arabidopsis seedlings for eliciting induced resistance, or both? Frontiers in Microbiology 7:196. doi: 10.3389/fmicb.2016.00196.

  75. Jeong, H., Lee, D.H., Ryu, C.M., Park, S.H. 2016. Toward Complete Bacterial Genome Sequencing through the Combined Use of Multiple Next-Generation Sequencing Platforms. Journal of Microbiology and Biotechnology 26:207-12.
  76. 2015

  77. Lee, B., Park, Y.S., Lee, S., Song, G.C., and Ryu, C.M. 2015. Bacterial RNAs activate innate immunity in Arabidopsis. New Phytologist 209:785-797.

  78. Song, G.C., Choi, H.K., and Ryu, C.M. 2015. Gaseous 3-pentanol primes plant immunity against a bacterial speck pathogen, Pseudomonas syringae pv. tomato via salicylic acid and jasmonic acid-dependent signaling pathways in Arabidopsis. Frontiers in Plant Science 6: 821.

  79. Park, Y.S., Bae, D.W., and Ryu, C.M. 2015. Aboveground whitefly infestation modulates transcriptional levels of anthocyanin biosynthesis and jasmonic acid signaling-related genes and augments the cope with drought stress of maize. PloS One 10: e0143879.

  80. Park, Y.S., and Ryu, C.M. 2015. Inter-organ defense networking: Leaf whitefly sucking elicits plant immunity to crown gall disease caused by Agrobacterium tumefaciens. Plant Signaling and Behavior 10: e1081325.

  81. Jeong, H., Lee, D.H., Ryu, C.M., and Park, S.H. 2015. Toward complete bacterial genome sequencing through the combined use of multiple next-generation sequencing platforms. Journal of Microbiology and Biotechnology 26: 1-6.

  82. Jeon, J., D Souza, R., Pinto, N., Ryu, C.M., Park, J.H., Yong, D., and Lee, K. 2015. Complete genome sequence of the siphoviral bacteriophage B?-R3177, which lyses an OXA-66-producing carbapenem-resistant Acinetobacter baumannii isolate. Archives of virology 160: 3157-3160.

  83. Audrain, B., Farag, M. A., Ryu, C. M., and Ghigo, J. M. 2015. Role of bacterial volatile compounds in bacterial biology. FEMS Microbiology Reviews 39: 222-233.

  84. Hossain, M. J., Ran, C., Liu, K., Ryu, C.M., Rasmussen-Ivey, C.R., Williams, M.A., Hassna, M.K., Choi, S.K., Jeong, H., Newman, M., Kloepper, J.W. and Liles, M.R. 2015. Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum. Frontiers in Plant Science 6.

  85. Jeong, H., Kloepper, J.W. and Ryu, C.M. 2015. Genome sequences of Pseudomonas amygdali pv. tabaci strain ATCC 11528 and pv. lachrymans strain 98A-744. Genome announcements 3: e00683-15.

  86. Jeong, H., Kloepper, J.W. and Ryu, C.M. 2015. Genome sequence of rhizobacterium Serratia marcescens strain 90-166, which triggers induced systemic resistance and plant growth promotion. Genome announcements 3: e00667-15.

  87. Chung, J.H., Song, G.C., and Ryu, C.M. 2015. Sweet scents from good bacteria: Case studies on bacterial volatile compounds for plant growth and immunity. Plant Molecular Biology 1-11.

  88. Park, Y.S., Park, K., Kloepper, J.W., and Ryu, C.M. 2015. Plant Growth-Promoting Rhizobacteria stimulate vegetative growth and asexual reproduction of Kalanchoe daigremontiana. The Plant Pathology Journal 31: 1-6.

  89. Ryu, C.M. 2015. Against friend and foe: Type 6 effectors in plant-associated bacteria. Journal of Microbiology 53: 201?208.

  90. Song, G.C., Lee, S., Hong, J., Choi, H.K., Hong, G.H., Bae, D.W., Mysore, K.S. Park, Y.S. and Ryu, C.M. 2015. Aboveground insect infestation attenuates belowground Agrobacterium-mediated genetic transformation. New Phytologist 207: 148?158.
  91. 2014

  92. Park, Y. S., and Ryu, C. M. 2014. Understanding cross-communication between aboveground and belowground tissues via transcriptome analysis of a sucking insect whitefly-infested pepper plants. Biochemical and Biophysical Research Communications 443: 272-277.

  93. Park, Y. S., Sim, Y. M., and Ryu, C. M. 2014. Genome sequence and comparative genome analysis of Pseudomonas syringae pv. syringae type strain ATCC 19310. Journal of microbiology and biotechnology 24: 563-567.

  94. Choi, H. K., Song, G. C., Yi, H. S., and Ryu, C. M. 2014. Field evaluation of the bacterial volatile derivative 3-Pentanol in priming for induced resistance in pepper. Journal of chemical ecology 40: 882-892.


  95. Choi, O., Ryu, C. M. and Kim, J. 2013. Biological Seed Treatment : Viable population changes of Paenibacillus polymyxa on seed and root Journal of Agriculture and Life Science 47: 39-47.

  96. Farag, M.A., Zhang, H.M. adn Ryu, C.M. 2013. Dynamic chemical communication between plants and bacteria through airborne signals: Induced resistance by bacterial volatiles. Journal of Chemical Ecology 39: 1007?1018, doi:10.1007/s10886-013-0317-9.

  97. Ryu, C. M. 2013. Promoting Plant Protection by Root-Associated Microbes. The Plant Pathology Journal 29 123-124.

  98. Yi, H.S., Yang, J.W. and Ryu C.M. 2013. ISR meets SAR outside: additive action of the endophyte Bacillus pumilus INR7 and the chemical inducer, benzothiadiazole, on induced resistance against bacterial spot in field-grown pepper. Frontiers in Plant Sciences 4: 122. DOI: 10.3389/fpls.2013.00122.

  99. Song, G.C., Choi, H.K. and Ryu, C.M. 2013. The folate precursor para-aminobenzoic acid elicits induced resistance against Cucumber mosaic virus and Xanthomonas axonopodis. Annals of Botany 111: 925-934.

  100. Song, G. C. and Ryu, C. M. 2013. Two volatile organic compounds trigger plant self-defense against a bacterial pathogen and a sucking insect in cucumber under open field conditions. International Journal of Molecular Sciences 14: 9803-9819.

  101. Sang, M.K., Kim, H.S., Myung, I.S., Ryu, C.M., Kim, B.S. and Kim, K.D. 2013. Chryseobacterium kwangjuense sp. nov., isolated from pepper (Capsicum annuum L.) root. International Journal of Systematic and Evolutionary Microbiology DOI10.1099/ijs.0.048496-0.

  102. Bee-Park, H., Lee, B., Kloepper, J.W. and Ryu, C.M. 2013. One shot-two pathogens blocked: Exposure of Arabidopsis to hexadecane, a long chain volatile organic compound, confers induced resistance against both Pectobacterium carotovorum and Pseudomonas syringae. Plant Signaling and Behavior 8: e24619.

  103. Lee, B., Park, Y.-S., Yi, H.-S., and Ryu, C. M. 2013. Systemic Induction of the Small Antibacterial Compound in the Leaf Exudate During Benzothiadiazole-elicited Systemic Acquired Resistance in Pepper. The Plant Pathology Journal 29: 350-355 DOI: 10.5423/ppj.nt.02.2031.0018.

  104. Kim, K.S., Lee, S. and Ryu, C.M. 2013. Interspecific bacterial sensing through airborne signals modulates locomotion and drug resistance. Nature Communications 4: 1809 DOI: 10.1038/ncomms2789.

  105. Ryu, C.M., Choi, H. K., Lee, C.H., Murphy, J. F., Lee, J.K. and Kloepper, J. W. 2013. Modulation of quorum sensing in acyl-homoserine lactone-producing or -degrading tobacco plants leads to alteration of induced systemic resistance elicited by the rhizobacterium Serratia marcescens 90-166. The Plant Pathology Journal http://dx.doi.org/10.5423/PPJ.SI.11.2012.0173.R2.


  106. Jeong, H., Jeong, D.E., Kim, S. H., Song, G. C., Park, S.Y., Ryu, C.M., Park, S.-H., and Choi, S.K., 2012. Draft Genome Sequence of a Plant Growth-Promoting Bacterium Bacillus siamensis KCTC 13613T. Journal of Bacteriology 194: 4148-4149.

  107. Hahm, M.S., Sumayo, M., Hwang, Y.J., Jeon, S.A., Park, S.J., Lee, J.Y., Ahn, J.H., Kim, B.S., Ryu, C.-M. and Ghim, S.Y. 2012. Biological control and plant growth promoting capacity of rhizobacteria on pepper under greenhouse and field conditions. Journal of Microbiology 50: 380-385.

  108. Lee, B., Farag, M. A., Park, H. B., Kloepper, J. W., Lee, S. H., and Ryu, C.M. 2012. Induced resistance by a long-chain bacterial volatile: elicitation of plant systemic defense by a C13 volatile produced by a root associated bacterium. PLoS One 7: e48744. doi:10.1371/journal.pone.0048744.

  109. Kim, K.-S., Park , S., Lee , S., Kang , S. B., Lee , J., Lee , S.G., Ryu, C.M. 2012. A novel fluorescent reporter system for monitoring and identifying RNase III activity and its target RNAs. RNA Biology 9: 1-10.

  110. Yi, H-S., Yang J. W., Choi, H. K., Ghim S.Y., and ., Ryu, C.-M. 2012. Benzothiadiazole-elicited defense priming and systemic acquired resistance against bacterial and viral pathogens of pepper under field conditions. Plant Biotechnology Reporter 6: 373-380.

  111. Kim, B. K., Chung, J.H., Kim, S.Y., Jeong, H., Kang, S.G., Kwon, S.K., Lee, C.H., Song, J.Y., Yu, D.S., Ryu, C.M., and Kim J. 2012 Genome sequence of the leaf-colonizing bacterium, Bacillus sp. 5B6 isolated from cherry tree. Journal of Bacteriology 194: 3758-3759.

  112. Lee, B., Lee S., and Ryu, C.M. 2012. Foliar aphid feeding recruits rhizosphere bacteria and primes plant immunity against pathogenic and non-pathogenic bacteria in pepper. Annals of Botany 110: 281-290.

  113. Lee, M-H., Oh, K-H., Kang, C.-H., Kim, J., Oh, T.-K., Ryu, C.-M., and Yoon, J.-H. 2012. Novel metagenome-derived cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase. Applied and Environmental Micriobiology 78: 4959-4966.

  114. Wang, K., Senthil-kumar, M., Ryu, C.-M., Kang, L., and Mysore, K. S. 2012. Phytosterols play a key role in plant innate immunity against bacterial pathogens by regulating nutrient efflux into the apoplast. Plant Physiology 158: 1789-1802.

  115. Rojas, C., Muthappa, S. K., Wang, K., Ryu, C.-M., Amita, K., and Mysore, K. 2012. Glycolate oxidase plays a major role during nonhost resistance responses by modulating reactive oxygen species mediated signal transduction pathways. Plant Cell 24: 336-352.


  116. Yi, H.-S., Yang, J. W., Ghim, S.-Y., and Ryu, C.-M. 2011. A cry for help from leaf to root: Recruiting rhizosphere microbes by aboveground insectattackleading to plant self-protection. Plant Signaling and Behavior 6: 1192-1194.

  117. Ryu, C.-M., Shin, J. N., Wang, Q., Mei, R., Kim, E. J., and Pan, J. G. 2011. Potential for augmentation of fruit quality by foliar application of bacilli spores on apple tree. The Plant Pathology Journal 27: 164-169.

  118. Choi, J., Choi, D., Lee, S., Ryu, C.-M. and Hwang, I. 2011. Cytokinin and plant immunity: Old foes or best friends. Trends in Plant Science 16: 388-394.

  119. Bae, H., Roberts D. P., Lim H.-S., Strem, M. D., Park, S.-C., Ryu, C.-M., Melnick, R. L., and Bailey B. A. 2011. Endophytic Trichoderma Isolates from Tropical Environments Delay Disease Onset and Induce Resistance against Phytophthora capsici in Hot Pepper Using Multiple Mechanisms. Molecular Plant-Microbe Interactions 24: 3396-3351.

  120. Kim, Y. C., Leveau, J., McSpadden Gardener , B. B., Pierson, E. A., Pierson, L. S. III, and Ryu CM. 2011. The multifactorial basis for plant health promotion by plant-associated bacteria. Applied and Environmental Microbiology 77:1548-1555.

  121. Yang, J. W., Yi, H.-S., Kim, H., Lee, B., Lee, S., Ghim, S.-Y., and Ryu, C.-M. 2011. Whitefly infestation elicits defense responses against bacterial pathogens on the leaf and root and belowground dynamic change of microflora in pepper. Journal of Ecology 99: 46-56.

  122. Uppalapati S. R., Ishiga Y., Ryu C.-M., Ishiga T., Wang K., Parker J., and Mysore K. S. 2011. SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis. New Phytologist 189:83-93.

  123. Yang, S. Y., Park, M. R., Kim, I. S., Kim, Y. C., Yang, J. W. and Ryu, C.-R. 2011. 2-Aminobenzoic acid of Bacillus sp. BS107 as an ISR determinant against Pectobacterium carotovorum subsp. carotovotrum SCC1 in tobacco. Europena Journal of Plant Pathology 29: 371-378.


  124. Phi, Q-T., Park, Y-M., Seul, K-J., Ryu, C.-M., Park, S-H., Kim, J-G., and Ghim, S-Y. 2010. Assessment of root-associated Paenibacillus polymyxa groups on growth promotion and induced systemic resistance in pepper. Journal of Microbiology and Biotechnology. 20: 1605-1613.

  125. Kim J. F., Jeong, H., Park, S.-Y., Kim, S.-B., Park, Y. K., Choi, S.-K., Ryu, C.-M., Hur, C.-G., Ghim, S.-Y., Oh, T. K., Kim, J. J., Park, C. S., and Park,. S.-H. 2010. Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681. Journal of Bacteriology 192: 6103-6104.

  126. Kwon, Y. S., Ryu, C.-M., Lee, S., Han, K. S., Lee, J. H., Lee K., Chung, W.S., Jeong, M.-J., Kim, H. K., and Bae, D.-W.2010. Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles. Planta. 232: 1355-1370.

  127. Wangdi, T, Uppalapati, S.R., Nagaraj, S., Ryu, C.M., Bender, C.L. and Mysore, K.S. 2010. A role for chloroplast-localized Thylakoid formation 1 (THF1) in bacterial speck disease development. Plant Signaling and Behavior. 5:425-427. doi: 10.4161/psb.5.4.11284.

  128. Yi , H-S., Ryu, C-M. and Heil, M. 2010. Sweet smells prepare plants for future stress: airborne induction of plant disease immunity. Plant Signaling and Behavior 5: 528-531.

  129. Yoon, J.H., Kang, S.J., Yi, H.S., Oh, T.K., and Ryu, C-M. 2010. Rhizobium soli sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 60: 1387-1393.

  130. Shi, C.-L., Park, H.-B., Lee, J. S. and Ryu, C.-M. 2010. Inhibition of primary roots and stimulation of lateral root development in Arabidopsis thaliana by the rhizobacterium Serratia marcescens 90-166 is through both auxin6 dependent and-independent signaling pathways. Molecules and Cells 29: 251-258.

  131. Wangdi, T., Uppalapati, S.R., Nagaraj, S., Ryu, C.M., Bender, C.L., Mysore, K.S. 2010. A virus-induced gene silencing screen identifies a role for Thylakoid Formation1 in Pseudomonas syringae pv. tomato symptom development in tomato and Arabidopsis1[W][OA]. Plant Physiolology 152: 281-292.


  132. Yang, JW., Yu, S. H., and Ryu, C-M. 2009. Priming of defense-related genes confers root-colonizing bacilli-elicited induced systemic resistance in pepper. The Plant Pathology Journal 25:389-399.

  133. Yi , H-S., Heil, M., Adame-?lvarez, R. M., Ballhorn, D. J., and Ryu, C-M. 2009. Airborne induction and priming of plant defenses against a bacterial pathogen1[C][OA]. Plant Physiology 151: 2152-2161.

  134. Kwon, S.J., Jin, H.C., Lee, S., Nam, M.H., Chung, J.H., Kwon, S.I., Ryu, C.M, and Park, O.K. 2009. GDSL lipase-like 1 regulates systemic resistance associated with ethylene signaling in Arabidopsis. The Plant Journal 58:235-245.

  135. Ham, M-S, Y-M. Park, H. R. Sung., M. Sumayo., C-M. Ryu, S.-H. Park, and S.-Y.Ghim. 2009. Characterization of Rhizobacteria Isolated from Family Solanaceae Plants in Dokdo Island. Korean Journal of Microbiology Biotechnology 37: 110?117.

  136. Yang, JW., Kloepper, J. W., Ryu, C.-M. 2009. Rhizosphere bacteria help plant tolerate against abiotic stress. Trends in Plant Science 16:1-4.


  137. Lee, B., Kim, D., and Ryu, C.-M. 2008 A super-absorbent polymer combination promotes bacterial aggressiveness uncoupled from the epiphytic population. The Plant Pathology Journal 24: 283-288.

  138. Kim, M. S., Cho, S. M., Kang, E. Y., Im, Y., Hwangbo, J. H., Kim, Y. C., Ryu, C.-M., Yang, K. Y., Chung, G. C., and Cho, B. H. 2008 Galactinol is a Signaling Component of the Induced Systemic Resistance Caused by Pseudomonas chlororaphis O6 Root Colonization. Molecular Plant-Microbe Interactions 21: 1643-1653.

  139. Park, S.-J., S.-Y. Park., C.-M. Ryu, S.-H. Park, and J.-K. Lee. 2008 The role of AIIA, a Quorum-Quenching enzyme from Bacillus thuringiensis, on the Rhizosphere competence. Journal of Microbiology and Biotechnology 18: 1518-1521.

  140. Phi, Q-T, Park ,Y-M, Ryu, C-M., Park, S.-H, and Ghim, S-Y. 2008 Functional Identification and Expression of Indole-3-Pyruvate Decarboxylase from Paenibacillus polymyxa E681. Journal of Microbiology and Biotechnology 18: 1235-1244.

  141. Park, S-Y, Kim, R., Ryu, C-M., Choi, S-K., Lee, C-H., Kim, J-G., Park, S-H. 2008 Citrinin, a mycotoxin from Penicillium citrinum, plays a role in inducing motility of Paenibacillus polymyxa. FEMS Microbiology Ecology 65: 229-237.

  142. Cho, S. M., Kang, B. R., Han, S. H., Anderson, A. J., Park, J.-Y., Lee, Y.-H., Cho, B. H., Yang, K.-Y., Ryu, C.-M., and Kim. Y. C., 2008 2R,3R-butanediol, a bacterial volatile produced by Pseudomonas chlororaphis O6 is involved in induction of systemic tolerance to drought in Arabidopsis thaliana. Molecular Plant-Microbe Interactions 8: 1067-1075.

  143. Park, K. S. J W. Kloepper, and Ryu, C-M. 2008 Rhizobacterial exopolysaccharides elicit induced resistance on cucumber Journal of Microbiology and Biotechnology 18: 1095-1100.

  144. Phi, Q. T., Oh, S.-H., Park, Y-M., Park, S.-H., Ryu, C.-M., and Ghim, S.-Y. 2008. Isolation and Characterization of Transposon-Insertional Mutants from Paenibacillus polymyxa E681 Altering the Biosynthesis of Indole-3-Acetic Acid. Current Microbiology 56: 524-530.

  145. Kim, Y-C, Park, S. Y., Ryu, C.-M. and Park, J. M. 2008, Molecular characterization of a pepper C2 domain-containing SRC2 protein implicated in resistance against host and non-host pathogens and abiotic stresses. Planta 227: 1169-1179.

  146. Ajith A., S. R. Uppalapati, C-M. Ryu, A. Stacy, L. Kang, Y. Tang and K. Mysore. 2008. Salicylic acid and systemic acquired resistance play a role in attenuating the crown gall disease caused by Agrobacterium tumefaciens. Plant Physiology 146: 703-715.

  147. Seul, K.-J., Park, S. H., Ryu, C.-M., Lee, Y.-H. and Ghim, S.-Y. 2008 Proteome Analysis of Paenibacillus polymyxa E681 Affected by Barley. Journal of Microbiology and Biotechnology 17:934-944.


  148. Ryu, C-M, B. R. Kang, S. H. Han, S, M, Cho, J. W. Kloepper, A. J. Anderson, and Y. C. Kim. 2007 Tobacco cultivars vary in induction of systemic resistance against Cucumber mosaic virus and growth promotion by Pseudomonas chlororaphis O6 and its gacS mutant. European Journal of Plant Pathology 119:383-390.

  149. Zhang, H., Kim, M.S., Krishnamachari, V., Payton, P., Sun, Y., Grimson, M., Farag, M.A., Ryu, C.M., Allen, R., Melo, I.S. and Pare, P.W. 2007 Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis Planta 226: 839-851.

  150. Jeong, J.-H., Jeong, D.-E., Lee, S.-J., Seul, K.-J., Ryu, C.-M., Park, S.-H., Ghim, S.-Y. 2007 The effects of wood vinegar on growth and resistance of peppers Korean Journal of Microbiology and Biotechnology 35: 41-44.

  151. Yi, S. Y., Choi D., Ryu, C.-M. 2007 Implication of a pepper h-type thioredoxin in type I- and II-nonhost resistance to Xanthomonas axonopodis. Plant Biotechnology Reports 1: 117-123

  152. Cho, H.-S., Park, S.-Y., Ryu, C.-M., Kim, J., Kim, J.-G., Park, S.-H. 2007 Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium. FEMS Microbiology Ecology 60: 14-23.

  153. Ryu, C-M, Murphy, J. F., Reddy, M. S. and Kloepper, J. W. 2007 A two strain mixture of rhizobacteria elicits induction of systemic resistance against Pseudomonas syringae and Cucumber mosaic virus coupled to promote plant growth on Arabidopsis thaliana. Journal of Microbiology and Biotechnology 17: 280-286.

  154. Kang, S. H., Cho, H-S., Cheong H., Ryu, C-M., Kim, J. F., and Park, S. H. 2007 Two Bacterial Endophytes, Pseudomonas rhodesiae and Pantoea ananatis, Elicit Plant Growth Promotion and Plant Defense on Pepper. Journal of Microbiology and Biotechnology 17: 96-103.

  155. Anand, A., Vaghchhipawala, Z., Ryu, C.-M., Kang, L., Wang, K., del-Pozo, O., Martin, G. B., and Mysore, K. S. 2007 Identification and characterization of genes involved in Agrobacterium-mediated plant transformation by virus-induced gene silencing. Molecular Plant-Microbe Interactions 19: 41-52.


  156. Ryu, C. M., Kima, J., Choi, o., Kima, S. H. and Park, C. S. 2006 Improvement of biological control capacity of Paenibacillus polymyxa E681 by seed pelleting on sesame. Biological Control: 39: 282-289.

  157. Kloepper, J. W. and. Ryu, C. M. 2006 Bacterial Endophytes as Elicitors of Induced Systemic Resistance in Who is an endophyte? Schulz/ Boyle/ Sieber Eds, Springer-Verlag Berlin Heidelberg, pp. 33-52. (A Book chapter).

  158. Farag, M. A., Ryu, C.-M., Sumner, L. W., Par? P. W. 2006 Profiling of rhizobacterial emissions reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 67: 2262-2268.

  159. Chung, E, Ryu, C-M, Oh, S-K, and Choi D. 2006 The essential role of pepper CaSgt1 and CaSkp1 genes in plant development and basal resistance. Physiologia Plantanum 126: 605-612.

  160. Oh, S-K, Lee, S, Chung, E, Park, J. M, Yu, S. H., Ryu, C.-M., and Choi, D. 2006 Insight into Types I and II nonhost resistance using expression patterns of defense-related genes in tobacco. Planta 213: 1102-1107.

  161. Kim, M., Lee, S., Park, K., Jeong, E.-J., Ryu, C.-M., Choi, D., and Pai, H.-S. 2006 Comparative microarray analysis of programmed cell death induced by proteasome malfunction and hypersensitive response in plants. Biochemical and Biophysical Research Communications Biochemical and Biophysical Research Communications 342:514-521.

  162. Chung, E., Ryu, c. M., Oh, S.-K., Kim, R. N., Park, J. M. , Cho, H. S., Lee, S., Moon, J. S., Park, S.-H. and Choi, D. 2006 Suppression of pepper SGT1 and SKP1 causes severe retardation of plant growth and compromises basal resistance. Physiologia Plantarum 126: 605-617.


  163. Jeong, H., Park, S-Y., Ryu, C-M., Kim, J. F., W. Choi, O. H., Park, S. Y., Park, S., and Park, C-S. 2005. Diversity of root-associated Paenibacillus spp. in winter crops from southern part of Korea. Journal of Microbiology and Biotechnology 15: 1286-1298.

  164. Ryu, C-M., Kim, J. W. Choi, O. H., Park, S. Y., Park, S. H., and Park, C-S. 2005. Nature of a root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. Journal of Microbiology and Biotechnology 15: 984- 991
  165. Pare, P. W., Farag, M. A., Ryu, C.M., and Kloepper, J. W. 2005. Elicitors and priming agents initiate plant defense responses. Photosynthesis research 85: 149-159.

  166. Ryu, C. M., Hu, C. H., Locy, R. D., and Kloepper, J. W. 2005. Study of mechanisms for plant growth promotion elicited by rhizobacteria in Arabidopsis thaliana. Plant and Soil 286: 285-292.

  167. Ryu, C.M., Farag, M. A., Pare, P. W., and Kloepper, J. W. 2005. Invisible signals from the underground: bacterial volatiles elicit plant growth promotion and induce systemic resistance. The Plant Pathology Journal 21: 7-12.


  168. Choi, O. H., Kim, J. W., Ryu, C.-M., and Park, C. S. 2004. Colonization and population changes of a biocontrol agent, Paenibacillus polymyxa E681, in seeds and roots. The Plant Pathology Journal 20: 97-102.

  169. Kloepper, J. W., Ryu, C.-M., and Zhang. S. 2004. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology 94: 1259-1266.

  170. Ryu C.M., Anand A., Kang L., Mysore K. S. 2004. Agrodrench: a novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species. The Plant Journal 40: 322-331.

  171. Mysore, K. S. And Ryu. C. -M. 2004. Nonhost resistance: How much do we know? Trends in Plant Science 9: 97-104.

  172. Ryu, C. -M., Murphy, J. F., Mysore, K. S., and Kloepper, J. W. 2004. Plant Growth-Promoting Rhizobacteria Protect Systemically Arabidopsis thaliana against Cucumber mosaic virus by a salicylic acid and NPR1-independent and jasmonic acid-dependent signaling pathway. The Plant Journal 39: 381-392.

  173. Ryu, C. M., Farag, M., Hu, C. H., Reddy, M. S., Pare, P., and Kloepper, J. W. 2004. Bacterial volatiles induced systemic resistance in Arabidopsis. Plant Physiology 134: 1017-1026..


  174. Ryu, C. M., Hu, C. H., Reddy, M. S., and Kloepper, J. W. 2003 Different signaling pathways of induced resistance by rhizobacteria in Arabidopsis thaliana against two pathovars of Pseudomonas syringae. New Phytologist 160: 413-420.

  175. Spencer, M., Ryu, C. M. Kim, Y. C. and Anderson, A. 2003. Induced defence in tobacco by Pseudomonas chlororaphis strain O6 involves at least the ethylene pathway. Physiological and Molecular Plant Pathology 63: 27-34.

  176. Murphy, J. F., Reddy, M. S., Ryu, C.-M., Kloepper, J. W. and Li, R. 2003 Rhizobacteria-Mediated Growth Promotion of Tomato Leads to Protection Against Cucumber mosaic virus. Phytopathology 93:1301-1307.

  177. Ryu, C. M., Farag, M., Hu, C. H., Reddy, M. S., H-S. Wei, Pare, P., and Kloepper, J. W. 2003. Bacterial volatiles promote growth in Arabidopsis. Proceedings of National Academy of Sciences in USA 100: 4927-4932.


  178. Yan, Z., Reddy, M. S., Ryu, C. M., McInroy, J., Woods, F., Wilson, M., and Kloepper, J. W. 2002. Induced systemic protection against tomato late blight elicited by plant growth-promoting rhizobacteria Phytopathology 92: 1329-1333.


  179. Kim, J. W., Choi, O. H., Kang, J. H., Ryu, C. M., Jeong, M. J., Kim, J. W., and Park, C. S. 1988. Trancing of some root rolonizing Pseudomonas in the rhizosphere using lux gene introduction bacteria. Korean Journal of Plant Pathology 14: 13-18.

Chapter in books

Items in the following list that are not available for download may be available upon request from the author. Please contact them directly for any such inquiry.


  1. Sharifi, R., and Ryu, C.M. 2016. Chatting With a Tiny Belowground Member of the Holobiome: Communication Between Plants and Growth-Promoting Rhizobacteri. In: Advances in Botanical Research. Chapter 6. Vol. 82. pp: 135-160. doi: 10.1016/bs.abr.2016.09.002.
  2. 2008

  3. Ryu, C.M., Yi, H.S., Ahn, Y.R., Kim, W.I., Zhang, H, Park S.H., Park, C.S., Farag, M.A., Park, P.W., and Kloepper, J.W. 2008. Dynamic communication between plants and rhizobacteria via volatile signals. In: Biology of Molecular Plant-Microbe Interactions. Vol. 6. The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN. M. Lorito, S. Woo and F. Scala, eds.
  4. 2006

  5. Kloepper, J. W. and. Ryu, C. M. 2006. Bacterial Endophytes as Elicitors of Induced Systemic Resistance In: Who is an endophyte? Schulz/ Boyle/ Sieber Eds, Springer-Verlag Berlin Heidelberg pp. 33-52.
  6. 2005

  7. Kloepper, J. W. Guti?rrez-Estrada, A. and. Ryu, C. M. 2005. Progress toward implementation of Bacillus spp. for plant growth promotion and biological control. In: Rhizosphere 2004-Perspectives and Challenges. A Tribute to Lorenz Hiltner. Hartmann, A., Schmid, M., Wenzel, W. and Hisinger, Ph. (eds.). GSF, Neuherberg.
  8. 2004

  9. Ryu, C.M., Farag, M. A., Hu, C. H., Reddy, M. S., Par?, P. W., and Kloepper, J. W. 2004. Volatiles produced by PGPR elicit plant growth promotion and induced resistance in Arabidopsis. In: 6th International Workshop on Plant Growth Promoting Rhizobacteria (M.S. Reddy, M. Anandaraj, S.J. Eapen, Y.R. Sarma, J.W. Kloepper, eds.), pp. 93-100. Indian Institute of Spices Research, Calicut, India.
  10. 2001

  11. Reddy, M. S., Ryu, C. M., and Kloepper, J. W. 2001. Can bacteria boost tomato growth and yield? In: Hightlight of Agricultural Research Volume 48 No. 2 Summer 2001. , http://www.ag.auburn.edu/resinfo/highlightsonline/summer01/sum-reddy.html
  12. 1998

  13. Kim, S.H., C.S. Park, J.B. Park, C.M. Ryu, J.W. Kim and C.W. Kang. 1998. Accelerated plant growth and biological control of soil-borne diseases using useful microorganisms in integrated mechanization system of Sesame (Sesamum indicum L.) production in Korea. 25th International Seed Testing Congress Seed Symposium 116p. Pretoria, Republic of South Africa.
  14. 1997

  15. Ryu, C-M. and Park, C-S. 1997. Enhancement of plant growth induced by endospore forming PGPR strain, Bacillus polymyxa E681. In: Plant Growth-Promoting Rhizobacteria- Present Status and Future Prospects. Proc. Int. Workshop on Plant Growth-Promoting Rhizobacteria, 4th. A. Ogoshi, K. Kobayshi, Y. Homma, F. Komada, N. Knodo, S. Akino, eds. Nakanishi Printing, Sapporo, Japan. Page 186-190.